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The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO).
The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups. The processes of the Editorial working group are modelled on the journal refereeing process. A complete treatment of the OBO Foundry is given in "The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration".
On this site you will find a table of ontologies, available in several formats, with details for each, and documentation on OBO Principles.
You can contribute to this site using GitHub OBOFoundry/OBOFoundry.github.io or get in touch with us by joining our mail list http://groups.google.com/forum/#!forum/obo-discuss.
bfo |
Basic Formal Ontology
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The upper level ontology upon which OBO Foundry ontologies are built. Detail | ||||||||
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Chemical Entities of Biological Interest
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A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds. Detail | ||||||||
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Human Disease Ontology
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An ontology for describing the classification of human diseases organized by etiology. 手机看youtube | ||||||||
go |
Gene Ontology
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An ontology for describing the function of genes and gene products Detail | ||||||||
obi |
Ontology for Biomedical Investigations
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An integrated ontology for the description of life-science and clinical investigations 求一个免费能用的vp | ||||||||
pato |
Phenotype And Trait Ontology
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An ontology of phenotypic qualities (properties, attributes or characteristics) 求一个免费能用的vp | ||||||||
po |
Plant Ontology
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The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. Detail | ||||||||
pr |
PRotein Ontology (PRO)
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An ontological representation of protein-related entities Detail | ||||||||
xao |
Xenopus Anatomy Ontology
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XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis. Detail | ||||||||
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Zebrafish anatomy and development ontology
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A structured controlled vocabulary of the anatomy and development of the Zebrafish Detail | ||||||||
aeo |
Anatomical Entity Ontology
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AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology Detail | ||||||||
agro |
Agronomy Ontology
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Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments Detail | ||||||||
amphx |
The Amphioxus Development and Anatomy Ontology
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An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum). Detail | ||||||||
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Ascomycete phenotype ontology
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A structured controlled vocabulary for the phenotypes of Ascomycete fungi Detail | 求一个免费能用的vp | |||||||
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Apollo Structured Vocabulary
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Defines terms and relations necessary for interoperation between epidemic models and public health application software that interface with these models Detail | ||||||||
aro |
Antibiotic Resistance Ontology
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Antibiotic resistance genes and mutations Detail | ||||||||
bco |
Biological Collections Ontology
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An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys. Detail | 能用的vp n | |||||||
bspo |
Biological Spatial Ontology
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An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces Detail | ||||||||
bto |
BRENDA tissue / enzyme source
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A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures. Detail | ||||||||
caro |
Common Anatomy Reference Ontology
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An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species Detail | ||||||||
cdao |
Comparative Data Analysis Ontology
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a formalization of concepts and relations relevant to evolutionary comparative analysis 手机看youtube | 极光vpm破解无限版 | |||||||
cheminf |
Chemical Information Ontology
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Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them. 极光vpm破解无限版 | 极光vpm破解无限版 | |||||||
chiro |
CHEBI Integrated Role Ontology
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CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes. 手机youtube免翻 | ||||||||
chmo |
Chemical Methods Ontology
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CHMO, the chemical methods ontology, describes methods used to Detail | ||||||||
cido |
Coronavirus Infectious Disease Ontology
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The Coronavirus Infectious Disease Ontology (CIDO) aims to ontologically represent and standardize various aspects of coronavirus infectious diseases, including their etiology, transmission, epidemiology, pathogenesis, diagnosis, prevention, and treatment. Detail | 极光vpm破解无限版 | |||||||
cl |
Cell Ontology
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The Cell Ontology is a structured controlled vocabulary for cell types in animals. Detail | ||||||||
clo |
Cell Line Ontology
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An ontology to standardize and integrate cell line information and to support computer-assisted reasoning. 现在能用的vp | 手机看youtube | |||||||
clyh |
Clytia hemisphaerica Development and Anatomy Ontology
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The Clytia hemisphaerica Development and Anatomy Ontology (CLYH) describes the anatomical and developmental features of the Clytia hemisphaerica life cycle. Detail | 极光vpm破解无限版 | |||||||
cmo |
Clinical measurement ontology
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Morphological and physiological measurement records generated from clinical and model organism research and health programs. 能用的v*p*n | ||||||||
cob |
Core Ontology for Biology and Biomedicine
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COB brings together key terms from a wide range of OBO projects to improve interoperability. Detail | ||||||||
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Contributor Role Ontology
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A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability. Detail | ||||||||
cteno |
Ctenophore Ontology
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An anatomical and developmental ontology for ctenophores (Comb Jellies) 现在能用的vp | ||||||||
cto |
CTO: Core Ontology of Clinical Trials
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The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials. Detail | ||||||||
cvdo |
Cardiovascular Disease Ontology
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An ontology to describe entities related to cardiovascular diseases 能用的v*p*n | 现在能用的vp | |||||||
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Dictyostelium discoideum anatomy
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A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum Detail | ||||||||
ddpheno |
Dictyostelium discoideum phenotype ontology
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A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum. Detail | ||||||||
dideo |
Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
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The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology 极光vpm破解无限版 | ||||||||
dpo |
Drosophila Phenotype Ontology
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An ontology of commonly encountered and/or high level Drosophila phenotypes. Detail | ||||||||
dron |
The Drug Ontology
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An ontology to support comparative effectiveness researchers studying claims data. Detail | ||||||||
duo |
Data Use Ontology
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DUO is an ontology which represent data use conditions. Detail | ||||||||
ecao |
The Echinoderm Anatomy and Development Ontology
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An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586). Detail | 求一个免费能用的vp | |||||||
eco |
Evidence ontology
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An ontology for experimental and other evidence statements. Detail | ||||||||
ecocore |
An ontology of core ecological entities
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An ontology to provide core semantics for ecological entities. Detail | ||||||||
ecto |
Environmental conditions, treatments and exposures ontology
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ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology). Detail | ||||||||
emapa |
Mouse Developmental Anatomy Ontology
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An ontology for mouse anatomy covering embryonic development and postnatal stages. Detail | ||||||||
envo |
Environment Ontology
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Ontology of environmental features and habitats Detail | ||||||||
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eagle-i resource ontology
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An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens. Detail | 能用的v*p*n | |||||||
eupath |
VEuPathDB ontology
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An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; http://veupathdb.org). Detail | ||||||||
exo |
Exposure ontology
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Vocabularies for describing exposure data to inform understanding of environmental health. Detail | ||||||||
fao |
Fungal gross anatomy
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A structured controlled vocabulary for the anatomy of fungi. 能用的v*p*n | ||||||||
fbbi |
Biological Imaging Methods Ontology
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A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research. Detail | ||||||||
fbbt |
Drosophila gross anatomy
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An ontology representing the gross anatomy of Drosophila melanogaster. Detail | ||||||||
fbcv |
FlyBase Controlled Vocabulary
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A structured controlled vocabulary used for various aspects of annotation by FlyBase. Detail | ||||||||
fbdv |
Drosophila development
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A structured controlled vocabulary of the development of Drosophila melanogaster. Detail | 能用的v*p*n | |||||||
fideo |
Food Interactions with Drugs Evidence Ontology
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Food-Drug interactions automatically extracted from scientific literature Detail | 求一个免费能用的vp | |||||||
flopo |
Flora Phenotype Ontology
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Traits and phenotypes of flowering plants occurring in digitized Floras Detail | ||||||||
fma |
Foundational Model of Anatomy Ontology (subset)
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This is currently a slimmed down version of FMA Detail | ||||||||
foodon |
FOODON
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A broadly scoped ontology representing entities which bear a “food role”. It encompasses materials in natural ecosystems and food webs as well as human-centric categorization and handling of food. Detail | ||||||||
fovt |
FuTRES Ontology of Vertebrate Traits
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FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT leverages the BioCollections Ontology (BCO) to link observations of individual specimens to their trait values. Traits are defined in the Ontology of Biological Attributes (OBA). Detail | ||||||||
fypo |
Fission Yeast Phenotype Ontology
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FYPO is a formal ontology of phenotypes observed in fission yeast. Detail | ||||||||
gaz |
Gazetteer
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A gazetteer constructed on ontological principles Detail | ||||||||
genepio |
Genomic Epidemiology Ontology
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The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks. Detail | ||||||||
geno |
Genotype Ontology
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An integrated ontology for representing the genetic variations described in genotypes, and their causal relationships to phenotype and diseases. Detail | ||||||||
geo |
Geographical Entity Ontology
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An ontology of geographical entities Detail | 能用的vp n | |||||||
gno |
Glycan Naming and Subsumption Ontology (GNOme)
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GlyTouCan provides stable accessions for glycans described at varyious degrees of characterization, including compositions (no linkage) and topologies (no carbon bond positions or anomeric configurations). GNOme organizes these stable accessions for interative browsing, for text-based searching, and for automated reasoning with well-defined characterization levels. Detail | ||||||||
hancestro |
Human Ancestry Ontology
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The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies. Detail | ||||||||
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Hymenoptera Anatomy Ontology
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A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants) 能用的v*p*n | ||||||||
hom |
Homology Ontology
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This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology. Detail | ||||||||
hsapdv |
Human Developmental Stages
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Life cycle stages for Human Detail | 极光vpm破解无限版 | |||||||
htn |
Hypertension Ontology
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An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines Detail | ||||||||
iao |
Information Artifact Ontology
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An ontology of information entities. Detail | ||||||||
iceo |
Integrative and Conjugative Element Ontology
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ICEO is an integrated biological ontology for the description of bacterial integrative and conjugative elements (ICEs). 求一个免费能用的vp | ||||||||
ico |
Informed Consent Ontology
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An ontology of clinical informed consents Detail | 能用的vp n | |||||||
ido |
Infectious Disease Ontology
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A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain. 现在能用的vp | 手机看youtube | |||||||
ino |
Interaction Network Ontology
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An ontology of interactions and interaction networks Detail | ||||||||
labo |
clinical LABoratory Ontology
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LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents. Detail | ||||||||
ma |
Mouse adult gross anatomy
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A structured controlled vocabulary of the adult anatomy of the mouse (Mus). Detail | ||||||||
maxo |
Medical Action Ontology
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Medical Action Ontology is an ontology... Detail | ||||||||
mco |
Microbial Conditions Ontology
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Microbial Conditions Ontology is an ontology... Detail | ||||||||
mf |
Mental Functioning Ontology
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The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning. Detail | ||||||||
mfmo |
Mammalian Feeding Muscle Ontology
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The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors. Detail | ||||||||
mfoem |
Emotion Ontology
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An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings. Detail | ||||||||
mfomd |
Mental Disease Ontology
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An ontology to describe and classify mental diseases such as schizophrenia, annotated with DSM-IV and ICD codes where applicable 能用的v*p*n | 能用的vp n | |||||||
mi |
Molecular Interactions Controlled Vocabulary
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A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Detail | 手机看youtube | |||||||
miapa |
MIAPA Ontology
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An application ontology to formalize annotation of phylogenetic data. Detail | ||||||||
micro |
Ontology of Prokaryotic Phenotypic and Metabolic Characters
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An ontology of prokaryotic phenotypic and metabolic characters Detail | ||||||||
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Measurement method ontology
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A representation of the variety of methods used to make clinical and phenotype measurements. Detail | ||||||||
mmusdv |
Mouse Developmental Stages
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Life cycle stages for Mus Musculus Detail | ||||||||
mod |
Protein modification
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PSI-MOD is an ontology consisting of terms that describe protein chemical modifications Detail | ||||||||
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Mondo Disease Ontology
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An ontology that harmonizes multiple disease resources. Detail | 能用的vp n | |||||||
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Molecular Process Ontology
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Processes at the molecular level Detail | ||||||||
mp |
Mammalian Phenotype Ontology
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Standard terms for annotating mammalian phenotypic data. Detail | 能用的vp n | |||||||
mpath |
Mouse pathology ontology
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A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes Detail | ||||||||
mpio |
Minimum PDDI Information Ontology
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An ontology of minimum information regarding potential drug-drug interaction information. 手机看youtube | ||||||||
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MHC Restriction Ontology
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An ontology for Major Histocompatibility Complex (MHC) restriction in experiments Detail | ||||||||
ms |
Mass spectrometry ontology
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A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry. Detail | ||||||||
nbo |
Neuro Behavior Ontology
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An ontology of human and animal behaviours and behavioural phenotypes Detail | ||||||||
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NCBI organismal classification
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An ontology representation of the NCBI organismal taxonomy Detail | ||||||||
ncit |
NCI Thesaurus OBO Edition
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NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental. Detail | ||||||||
ncro |
Non-Coding RNA Ontology
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An ontology for non-coding RNA, both of biological origin, and engineered. Detail |